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SMURF
SMURF
  • Installation
  • Tutorials
    • Soft Segmentation Tutorial (Lite version)
    • Soft Segmentation Tutorial (Full version)
    • Unrolling Tutorial
    • Unrolling (Mouse Brain Data)
    • Unrolling (Mouse Small Intestine Data)
    • Nuclei Segmentation by StarDist
  • Data Structure
  • API
    • SMURF
      • smurf.calculate_weight_to_celltype
      • smurf.expanding_cells
      • smurf.get_finaldata
      • smurf.get_finaldata_fast
      • smurf.itering_arragement
      • smurf.make_pixels_cells
      • smurf.make_preparation
      • smurf.nuclei_rna
      • smurf.plot_cellcluster_position
      • smurf.plot_results
      • smurf.prepare_dataframe_image
      • smurf.return_celltype_plot
      • smurf.singlecellanalysis
      • smurf.start_optimization
    • Spatial Object
      • smurf.spatial_object.spatial_object
      • smurf.spatial_object.spatial_object.add_segmentation
      • smurf.spatial_object.spatial_object.generate_cell_spots_information
      • smurf.spatial_object.spatial_object.image_temp
  • Release notes
  • References
  • GitHub
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