Datasets

Import Pycallingcards as:

import pycallingcards as cc

Built in data

Here we host some published datasets that are useful for benchmarking and testing models.

datasets.mousecortex_data	Mouse cortex single-cell calling cards data [Moudgil et al., 2020].
datasets.SP1_K562HCT116_data	Transcription factor SP1 is added to both K562 and HCT-116 cell lines seperately.
datasets.mouse_brd4_data	Bulk Brd4 bindings for both male and female mice [Kfoury et al., 2021].
datasets.SP1_Cre_data	Bulk SP1 bindings for both P10 and P28 cohort in Cre-driver mouse lines [Cammack et al., 2020].