Plotting

Import Pycallingcards as:

import pycallingcards as cc

plotting.draw_area	Plot the specific area of the genome.
plotting.draw_area_mu	Plot the specific area of the genome (Designed for mudata object).
plotting.whole_peaks	Plot all the peaks in chromosomes.
plotting.calculate_signal	Calculate the matrix of Chip-seq signal in each peak.
plotting.signal_plot	Plot the Chip-seq signal of peaks.
plotting.signal_heatmap	Plot the heatmap plot the Chip-seq signal of peaks.
plotting.rank_peak_groups	Plot ranking of peaks.
plotting.plot_matched	Plot matched peak,gene and cluster pair (Designed for mudata object).
plotting.volcano_plot	Plot the volcano plot comparing two sample/cluster.
plotting.heatmap	Plot ranking of peaks.
plotting.dotplot_bulk	Plot ranking of peaks.
plotting.dotplot_sc	Plot ranking of peaks.
plotting.dotplot_sc_mu	Designed for mudata object.
plotting.WashU_browser_url	Display qbed, bed data in WashU Epigenome Browser [Li et al., 2019].
plotting.GWAS_adata_sc	Plot GWAS results for the different cell types in single-cell calling cards data.
plotting.GWAS_adata_bulk	Plot GWAS results for different cell types in bulk calling cards data.