pycallingcards.datasets.mousecortex_data

pycallingcards.datasets.mousecortex_data(data)

Mouse cortex single-cell calling cards data [Moudgil et al., 2020].

Parameters:

data (Optional[Literal['qbed', 'barcodes', 'RNA', 'CC', 'Mudata']]) – [‘qbed’,’barcodes’,’RNA’,’CC’]. qbed reads the qbed file. barcodes reads the barcodes file. | RNA reads the RNA anndata. | CC reads the CC anndata. | Mudata reads the mudata for both RNA and CC.

Return type:

Union[DataFrame, AnnData]

Example:

>>> import pycallingcards as cc
>>> data = cc.datasets.mousecortex_data(data='qbed')