pycallingcards.tools.find_fastq#

pycallingcards.tools.find_fastq(chrm, start, end, path)[source]#

Find the fastq file of a specific part of a gene.

Parameters:

chrm (str) – The chromosome to search.
start (int) – Start site of the chomosome.
end (int) – End site of the chomosome.
path (str) – The path of data. Please download the reference data from mm10 , hg38 or sacCer3 . Then unzip the .fa data before using this function.

Return type:

str