pycallingcards.datasets.SP1_Cre_data#

pycallingcards.datasets.SP1_Cre_data(data)[source]#

Bulk SP1 bindings for both P10 and P28 cohort in Cre-driver mouse lines [Cammack et al., 2020].

Parameters:: data (Optional[Literal['SP1_P10', 'SP1_P28', 'background']]) – [‘SP1_P10’,’SP1_P28’,’background’]. SP1_P10 reads the qbed file for P10 cohert. | SP1_P28 reads the qbed file for P28 cohert. | background reads the qbed file for backgound.
Return type:: Union[DataFrame, AnnData]
Example:

>>> import pycallingcards as cc
>>> data = cc.datasets.SP1_Cre_data(data='SP1_P10')