pycallingcards.datasets.SP1_K562HCT116_data#
- pycallingcards.datasets.SP1_K562HCT116_data(data)[source]#
Transcription factor SP1 is added to both K562 and HCT-116 cell lines seperately. Wild-type single-cell calling cards is data also recorded in mixed K562 and HCT-116 cell lines [Moudgil et al., 2020].
- Parameters:
data (
Optional[Literal['HCT116_SP1_qbed','K562_SP1_qbed','HCT116_brd4_qbed','K562_brd4_qbed','barcodes']]) – [‘HCT116_SP1_qbed’,’K562_SP1_qbed’,’HCT116_brd4_qbed’,’K562_brd4_qbed’,’barcodes’]. experience_qbed reads the qbed file for the combined data for K562 and HCT-116 cell lines. | background_qbed reads the qbed file for the data for mixed K562 and HCT-116 cell lines. | barcodes reads the barcode file for the combined data for K562 and HCT-116 cell lines.- Return type:
- Example:
>>> import pycallingcards as cc >>> data = cc.datasets.SP1_K562HCT116_data(data='HCT116_SP1_qbed')