pycallingcards.datasets.mouse_brd4_data

pycallingcards.datasets.mouse_brd4_data(data)

Bulk Brd4 bindings for both male and female mice [Kfoury et al., 2021].

Parameters:

data (Optional[Literal['Female_Brd4', 'Male_Brd4', 'RNA', 'CC', 'Female_Brd4_rep1', 'Female_Brd4_rep2', 'Male_Brd4_rep1', 'Male_Brd4_rep2']]) – [‘Female_Brd4’,’Male_Brd4’,’RNA’]. | Female_Brd4 reads the qbed file for the bulk Brd4 binding data for female mouse . | Male_Brd4 reads the qbed file for the bulk Brd4 binding data for male mouse. | RNA reads the normalized RNA data. | CC reads the anndata object.

Return type:

Union[DataFrame, AnnData]

Example:

>>> import pycallingcards as cc
>>> data = cc.datasets.mouse_brd4_data(data='Female_Brd4')