Installation¶

Pip¶

Pycallingcards can be installed via pip.

pip install pycallingcards

pip install "git+https://github.com/The-Mitra-Lab/pycallingcards.git" --upgrade

In order to complete the annotation, bedtools (includes pybedtools) also needs to be installed.

For the motif calling part, HOMER is utilized. Please install them before using this function.

If you are using conda environment, you can install bedtools and HOMER by

conda install bedtools
conda install homer