API#
Import Pycallingcards as:
import pycallingcards as cc
- Datasets
- Reading
- Preprocessing
- pycallingcards.preprocessing.clean_qbed
- pycallingcards.preprocessing.call_peaks
- pycallingcards.preprocessing.combine_peaks
- pycallingcards.preprocessing.separate_peaks
- pycallingcards.preprocessing.annotation
- pycallingcards.preprocessing.make_Anndata
- pycallingcards.preprocessing.filter_peaks
- pycallingcards.preprocessing.adata_insertions
- pycallingcards.preprocessing.down_sample
- Tools
- pycallingcards.tools.call_motif
- pycallingcards.tools.compare_motif
- pycallingcards.tools.rank_peak_groups
- pycallingcards.tools.rank_peak_groups_mu
- pycallingcards.tools.rank_peak_groups_df
- pycallingcards.tools.diff2group_bygroup
- pycallingcards.tools.diff2group_bysample
- pycallingcards.tools.DE_pvalue
- pycallingcards.tools.pair_peak_gene_bulk
- pycallingcards.tools.pair_peak_gene_sc
- pycallingcards.tools.pair_peak_gene_sc_mu
- pycallingcards.tools.liftover
- pycallingcards.tools.find_location
- pycallingcards.tools.result_mapping
- pycallingcards.tools.GWAS
- pycallingcards.tools.GWAS_adata_bulk
- pycallingcards.tools.GWAS_adata_sc
- pycallingcards.tools.footprint
- pycallingcards.tools.find_fastq
- Plotting
- pycallingcards.plotting.draw_area
- pycallingcards.plotting.draw_area_mu
- pycallingcards.plotting.whole_peaks
- pycallingcards.plotting.calculate_signal
- pycallingcards.plotting.signal_plot
- pycallingcards.plotting.signal_heatmap
- pycallingcards.plotting.rank_peak_groups
- pycallingcards.plotting.plot_matched
- pycallingcards.plotting.volcano_plot
- pycallingcards.plotting.heatmap
- pycallingcards.plotting.dotplot_bulk
- pycallingcards.plotting.dotplot_sc
- pycallingcards.plotting.dotplot_sc_mu
- pycallingcards.plotting.WashU_browser_url
- pycallingcards.plotting.GWAS_adata_sc
- pycallingcards.plotting.GWAS_adata_bulk