Preprocessing

Import Pycallingcards as:

import pycallingcards as cc

preprocessing.clean_qbed	Clean qbed with some extra chromosomes.
preprocessing.call_peaks	Call peaks from qbed data.
preprocessing.combine_peaks	Combine two peaks.
preprocessing.separate_peaks	Separate two peaks.
preprocessing.annotation	Annotate the peak data using bedtools [Quinlan and Hall, 2010].
preprocessing.make_Anndata	Make cell(sample) by using peak anndata for calling cards.
preprocessing.filter_peaks	Filter peaks based on the number of cells or counts.
preprocessing.adata_insertions	Calculate sum of peaks per cluster or average peaks per cell in different cluster and give it to anndata object.
preprocessing.down_sample	Down sample insertion data.