pycallingcards.tools.compare_motif#

pycallingcards.tools.compare_motif(motif_path1, motif_path2, qvalue_cutoff=0.05, pvalue_cutoff=0.05)[source]#

Compare the motifs from the motif results of two groups from HOMER and [Heinz et al., 2010]. Here, we will find the motif in group1 but not in group2.

Parameters:

  • peaks_path1 – The path of motif result for the first dataset.

  • peaks_path2 – The path of motif result for the second datast.

  • qvalue_cutoff (float (default: 0.05)) – The cutoff for q-value (Benjamini).

  • pvalue_cutoff (float (default: 0.05)) – The cutoff for p-value.

Return type:

DataFrame