Index A | C | D | F | G | H | L | M | P | R | S | V | W A adata_insertions() (in module pycallingcards.preprocessing) annotation() (in module pycallingcards.preprocessing) C calculate_signal() (in module pycallingcards.plotting) call_motif() (in module pycallingcards.tools) call_peaks() (in module pycallingcards.preprocessing) clean_qbed() (in module pycallingcards.preprocessing) combine_peaks() (in module pycallingcards.preprocessing) combine_qbed() (in module pycallingcards.reading) compare_motif() (in module pycallingcards.tools) D DE_pvalue() (in module pycallingcards.tools) diff2group_bygroup() (in module pycallingcards.tools) diff2group_bysample() (in module pycallingcards.tools) dotplot_bulk() (in module pycallingcards.plotting) dotplot_sc() (in module pycallingcards.plotting) dotplot_sc_mu() (in module pycallingcards.plotting) down_sample() (in module pycallingcards.preprocessing) draw_area() (in module pycallingcards.plotting) draw_area_mu() (in module pycallingcards.plotting) F filter_peaks() (in module pycallingcards.preprocessing) find_fastq() (in module pycallingcards.tools) find_location() (in module pycallingcards.tools) footprint() (in module pycallingcards.tools) G GWAS() (in module pycallingcards.tools) GWAS_adata_bulk() (in module pycallingcards.plotting) (in module pycallingcards.tools) GWAS_adata_sc() (in module pycallingcards.plotting) (in module pycallingcards.tools) H heatmap() (in module pycallingcards.plotting) L liftover() (in module pycallingcards.tools) M make_Anndata() (in module pycallingcards.preprocessing) mouse_brd4_data() (in module pycallingcards.datasets) mousecortex_data() (in module pycallingcards.datasets) P pair_peak_gene_bulk() (in module pycallingcards.tools) pair_peak_gene_sc() (in module pycallingcards.tools) pair_peak_gene_sc_mu() (in module pycallingcards.tools) plot_matched() (in module pycallingcards.plotting) R rank_peak_groups() (in module pycallingcards.plotting) (in module pycallingcards.tools) rank_peak_groups_df() (in module pycallingcards.tools) rank_peak_groups_mu() (in module pycallingcards.tools) read_barbodes() (in module pycallingcards.reading) read_qbed() (in module pycallingcards.reading) read_rna() (in module pycallingcards.reading) result_mapping() (in module pycallingcards.tools) S save_bed() (in module pycallingcards.reading) save_qbed() (in module pycallingcards.reading) separate_peaks() (in module pycallingcards.preprocessing) signal_heatmap() (in module pycallingcards.plotting) signal_plot() (in module pycallingcards.plotting) SP1_Cre_data() (in module pycallingcards.datasets) SP1_K562HCT116_data() (in module pycallingcards.datasets) V volcano_plot() (in module pycallingcards.plotting) W WashU_browser_url() (in module pycallingcards.plotting) whole_peaks() (in module pycallingcards.plotting)